猪GRP78基因克隆、生物信息学分析及组织表达谱研究

本研究旨在克隆猪葡萄糖调节蛋白78（glucose-regulated protein 78，GRP78）基因，并进行生物信息学分析，探讨其在猪不同组织中的表达情况。根据GenBank上公布的猪GRP78基因序列（登录号：XM_001927795.6）设计引物，PCR扩增及测序获得猪GRP78基因CDS序列，使用在线软件分析GRP78的理化性质、跨膜结构、信号肽、疏水性、保守结构域、二级结构和三级结构，并进行同源性比对及系统进化树构建，利用实时荧光定量PCR方法检测猪GRP78基因在各组织中的表达情况。结果显示，猪GRP78基因CDS区长1 965 bp，可编码654个氨基酸。生物信息学分析表明，GRP78理论分子质量为72.3 ku，等电点（pI）为5.06，半衰期为30 h，其水溶液在280 nm处的消光系数为30 495，肽链N端为蛋氨酸（Met），不稳定系数为32.39，属于稳定蛋白。脂肪系数为85.40，总平均疏水指数为-0.496，无跨膜结构，存在信号肽序列，说明该蛋白属于分泌型蛋白；GRP78蛋白只包含1个超家族保守结构域：HSP70结构域。蛋白二级结构分析显示，GRP78蛋白中α-螺旋、延伸链、β-转角和无规则卷曲分别为40.06%、20.49%、8.10%和31.35%。同源性比对结果显示，猪GRP78基因与人（登录号：NM_005347.4）、小鼠（登录号：NM_001163434.1）、大鼠（登录号：NM_013083.2）、山羊（登录号：XM_005687138.3）、牛（登录号：NM_001075148.1）核苷酸序列的同源性分别为93%、91%、90%、95%、95%，氨基酸序列的同源性分别为99%、98%、98%、99%、99%，各个物种之间GRP78基因保守性较高。实时荧光定量PCR结果显示，GRP78基因在心脏、肝脏、脾脏、肺脏、肾脏、小肠、胃、卵巢、输卵管、乳腺、小脑、大脑、垂体等组织中均有表达，在心脏、脾脏、肺脏中相对高表达。本研究结果为今后深入研究GRP78基因的生物学功能提供了基础材料。     

Effect of Pathogen Synergistic Pathogenicity on Severity of Verticillium Wilt of Cotton

Verticillium dahliae is a soil-borne and vascular pathogen causing Verticillium wilt of cotton, which is one of the most severe diseases affecting cotton production in China. Recently, a soil-inhabiting opportunistic pathogen was isolated and identified as Scopulariopsis gossypii; it could infect the host through wounds and increase disease severity in combination with V. dahliae. S. gossypii was able to form conidia in a nutritionally poor substrate and had similar biological characteristics to other vascular pathogens, while ultrastructure observation also confirmed that it was present in vascular tissue of cotton plants and produced conidia. Nematode activity in soil could cause wounds on the surface of cotton roots resulting in infection by the pathogens. On the basis of our analysis of the biological characteristics and infection process of S. gossypii and its interactions with other pathogens in cotton plants, we propose establishing a research program for multipathogen-host interactions in the cotton rhizosphere, which will enable detailed investigation of the synergistic pathogenesis of S. gossypii and V. dahliae.     

Two biomass preparation methods provide insights into studying microbial communities of intestinal mucosa in grass carp (Ctenopharyngodon idellus)

Animal digestive tract is habitat for a large number of autochthonous microbiota, which play central roles in multiple biological and physiological processes of the host. In this study, two different micro‐biomass preparation methods were employed to evaluate the diversity of intestinal mucosa‐associated microbiota in grass carp (Ctenopharyngodon idellus). Genomic DNAs were isolated either directly from intestinal mucosal samples (group A), or from micro‐biomass after microbial dissociation (group B). Community richness, diversity and evenness indices were all higher in group B, but differences were not statistically significant (P = 0.97, P = 0.33, P = 0.34 respectively). Furthermore, group B samples exhibited an increased ratio of bacterial DNA in comparison with group A samples, but the difference was also not statistically significant (P = 0.74). In addition, there were no statistically significant differences between the two groups (P > 0.05) at the taxonomic level. Our results support previous findings that there exists a great abundance of the intestinal mucosa‐adherent microbiota in the grass carp; among these, Proteobacteria, Firmicutes, Bacteroidetes, Actinobacteria, Spirochaetes and Fusobacteria were the most common phyla. Within these microbiota, Paenibacillus, Bacteroides, Bacillus and Cetobacterium genera comprise the majority of the community, implicating their functional importance (e.g. as probiotics) to their host. Our results contribute towards a better understanding of the intestinal microbial profile of grass carp. Both micro‐biomass preparation techniques proved to be feasible for studying mucosa‐adherent microbiota of grass carp; however, the second method (group B) provides a protocol that is somewhat more effective than the first method (group A).     

Effect of l‐ascorbyl‐2‐polyphosphate supplementation on growth performance,body composition,antioxidative capacity and salinity stress tolerance of juvenile Pacific white shrimp,Litopenaeus vannamei

An 8‐week feeding trial was conducted to evaluate the effects of ascorbic acid (AsA), in the form of l ‐ascorbyl‐2‐polyphosphate (LAPP) on growth performance, body composition, antioxidative capacity and salinity stress tolerance of juvenile Pacific white shrimp, Litopenaeus vannamei. Five practical diets (46% crude protein and 7.6% lipid) supplemented with graded levels of AsA (14.64, 48.55, 84.98, 308.36 and 639.27 mg kg^?1 diet) were fed to five replicate groups of L. vannamei (mean initial wet weight 0.57 g). No significant differences were found on growth performance among all treatments. However, whole body lipid content significantly decreased with dietary AsA levels increasing. Activities of total antioxidant capacity, glutathione reductase and glutathione peroxidase were significantly affected by dietary AsA levels. Shrimp fed LAPP‐free diet had higher malondialdehyde content than those fed the diets supplemented with LAPP. Dietary AsA levels higher than 308.36 mg kg^?1 diet increased the survival of shrimps after 1, 2 and 3 h of acute salinity change. Broken‐line regression analysis on survival after 3 h of salinity stress and second‐degree polynomial regression analysis on glutathione reductase data indicated that the optimal dietary AsA requirement of L. vannamei was estimated to be 306.39, 319.75 mg kg^?1 diet respectively.     

高产、抗病转基因抗虫棉品种——中棉所94A915

概述了中棉所94A915的选育经过、特征特性，并总结了其关键栽培技术。     

Stability analysis of seven agronomic traits for soybean [(Glycine max (L.) Merr.] Tokachi nagaha and its derived cultivars using the AMMI model

The stabilities of seven agronomic traits were analyzed and the general stabilities of soybean [Glycine max (L.) Merr.] accessions were evaluated based on the additive main effects and multiplicative interactions (AMMI) model using the founder parent Tokachi nagaha and 137 of its derived cultivars as materials. The objective was to provide a theoretical basis for effectively using germplasm in soybean breeding and production. Analysis of variance (ANOVA) showed that genotype, environment, and genotype by environment interactions were significantly different for each trait. The first three interaction principal components axes (IPCA) were highly significant, accounting for 61.28–70.00% of the total variation. The stability differed for the different traits. 50 cultivars with high general stabilities were identified. The general stability of Tokachi nagaha was moderate, as the stability coefficients (D_i) of its seven traits were relatively high; this must be considered by breeders using this cultivar as a breeding parent. There were significant positive correlations between the phenotypic values and their own D_i values for number of branches per plant, number of pods per plant, number of seeds per plant, and seed weight per plant. This would lead to the expectation that the phenotypic stability would be lower when a cultivar had more branches, pods, seeds, and high per plant yields. Thus, it appears difficult to breed cultivars that simultaneously have high yields and high stability.     

Effects of the dietary protein to energy ratio on growth,feed utilization and body composition in Macrobrachium nipponense

Oriental river prawn (Macrobrachium nipponense) has been widely cultured in Asian countries. However, its nutritional studies are very limited. In the present 8‐week study, we investigated the effects of dietary protein to energy ratio (P/E ratio) on the growth, feed utilization and body composition in juvenile M. nipponense (initial weight 0.302 ±0.03 g). Two‐factor experiment was designed and nine semi‐purified diets were formulated to contain three lipid levels (20, 80 and 140 g kg^?1) and three protein levels (330, 380 and 430 g kg^?1), producing P/E ratios from 16.5 to 23.4 mg KJ^?1 protein. The results indicated that the growth, survival rate and protein efficiency were dose dependently improved by the increased dietary lipid, but not dietary protein content. Increased dietary lipid content and/or protein content increased lipid accumulation in whole body, hepatopancreas and muscle, but did not change the feed intake and hepatopancreas weight. In conclusion, our present study indicated that M. nipponense is a species with relatively high‐energy requirement. It could utilize dietary lipid content up to 140 g kg^?1, while the dietary protein with more than 330 g kg^?1 would not promote growth and protein efficiency. Taken together, 330 g kg^?1 dietary protein and 140 g kg^?1 dietary lipid level with P/E ratio 16.49 could be optimum for M. nipponense.     

三氯生对红白鲫运动行为的影响

利用视频跟踪系统研究三氯生(TCS)对红白鲫运动行为的影响。将红白鲫(red-white crucian carp)暴露在5种不同浓度的TCS(0.50、0.60、0.70、0.80和0.90 mg/L)水体中,视频记录5 min内红白鲫的运动轨迹(运动轨迹线、摆动次数)、游动速度和垂直穿梭次数的变化。同时,进行TCS(0.60、0.69 mg/L)对红白鲫的14 d暴露实验,暴露实验结束后,2 min内监测上述指标。结果显示:短期TCS暴露,红白鲫的运动轨迹条数、摆动次数、垂直穿梭次数、运动速率显著增加;暴露14 d后的红白鲫上述运动行为学指标显著降低。结果表明:在一定浓度范围内,TCS能够改变红白鲫的运动行为。     

The influence of diet on the grass carp intestinal microbiota and bile acids

To elucidate the influence of different diet on the intestinal microbe and bile acids, we characterized the microbiota and bile acids in the hindgut content of grass carp fed on formula feed (FF group) or Sudan grass (SG group). Fusobacteria and Proteobacteria were significantly more represented in FF group than in SG group whereas Bacteroidetes was significantly more abundant in SG group than in FF group. Simpson diversity was significantly higher in FF group than in SG group (t = 2.33, P < 0.05). Chenodeoxycholic acid (CDCA) was the most abundant primary bile acid in the two groups, with average concentrations of 1.03 ± 0.62 and 4.44 ± 1.80 ng mg^?1 in SG and FF group respectively. The most abundant secondary bile acid was deoxycholic acid (DCA) in SG group and ursodeoxycholic acid (UDCA) in FF group, with average concentrations of 0.17 ± 0.06 and 2.67 ± 0.88 ng mg^?1 respectively. UDCA is significantly more abundant in FF group than in SG group, and the total bile acids were higher in FF group than in SG group. Cetobacterium and Fusobacteriaceae U114 were significantly related with the concentrations of CDCA (r = 0.85, P < 0.05 and r = 0.82, P < 0.05 respectively) and UDCA (r = 0.92, P < 0.01 and r = 0.92, P < 0.01 respectively). However, Bacteroides was negatively related with the concentration of UDCA (r = ?0.67, P < 0.05). Overall, there existed certain relationship between the intestinal microbes and the faecal bile acids, and they were both influenced by the diet.